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Bacteria and Mycoplasmas detail

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Bacteria Collection: Streptococcus gordonii

NCTC Number: NCTC 7865
Current Name: Streptococcus gordonii
Original Strain Reference: ATCC 10558
Other Collection No: ATCC 10558; CCUG 25608; CCUG 33482; CCUG 35801; CIP 105258; DSM 6777; JCM 12995; LMG 14518
Previous Catalogue Name: Streptococcus gordonii
Type Strain: Yes
Family: Streptococcaceae
Hazard Group (ACDP): 2
Release Restrictions: Terms & Conditions of Supply of Microbial Pathogens: Safety
Antigenic Properties: serovar group h
Conditions for growth on solid media: Columbia blood agar, 24-48 hours, 37°C, aerobic
Conditions for growth on liquid media: nutrient broth,37, facultative anaerobe
Isolated From: human, sub acute bacterial endocarditis
Whole Genome Sequence: http://www.ebi.ac.uk/ena/data/view/ERS901511
Annotated Genome: ftp://ftp.sanger.ac.uk/pub/project/pathogens/NCTC3000/d...
16S rRNA Gene Sequence: >gb|AF003931|ATCC 10558|Streptococcus gordonii 16S ribosomal RNA gene, complete sequence.| tttgatcctggctca... >gb|D38483|NCTC7865|Streptococcus gordonii 16S rRNA gene.| agagtttgatcatgg... >gb|AY485606|ATCC 10558|Streptococcus gordonii strain ATCC 10558 16S small subunitribosomal RNA gene, partial sequence.| gacgaacgctggcgg... >gb|AY353081|ATCC 10558|Streptococcus gordonii strain ATCC 10558 16S-23S ribosomal RNAintergenic spacer, partial sequence.| ctaaggaaaaacgga... >gb|AB051019|ATCC 10558|Streptococcus gordonii DNA, 16S-23S rRNA intergenic spacer region.| ctaaggaaaaacgga...
23S rRNA Gene Sequence: >gb|AY485606|ATCC 10558|Streptococcus gordonii strain ATCC 10558 16S small subunitribosomal RNA gene, partial sequence.| gacgaacgctggcgg... >gb|AY353081|ATCC 10558|Streptococcus gordonii strain ATCC 10558 16S-23S ribosomal RNAintergenic spacer, partial sequence.| ctaaggaaaaacgga... >gb|AB051019|ATCC 10558|Streptococcus gordonii DNA, 16S-23S rRNA intergenic spacer region.| ctaaggaaaaacgga...
Bibliography: HARE R 1935 J.PATH.BACT. 41 499;WHITE J C & NIVEN C F 1946 J.BACT. 51
Extended Bibliography: showhide Show bibliography
Ref #: 95527
Author(s): Kawamura,Y.;Hou,X.G.;Sultana,F.;Miura,H.;Ezaki,T.
Journal: Int J Syst Bacteriol
Title: Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus
Volume: 45
Page(s): 406-8
Year: 1995
Keyword(s): GENBANK/D38482 GENBANK/D38483 DNA, Bacterial/*genetics Molecular Sequence Data Phylogeny RNA, Bacterial/*genetics RNA, Ribosomal, 16S/*genetics Streptococcus/*classification/genetics
Remarks: We determined the 16S rRNA sequences of the type strains of Streptococcus mitis and Streptococcus gordonii and calculated the phylogenetic distances between those organisms and other members of the genus Streptococcus. The viridans group streptococci were separated into five phylogenetic groups; we named these groups the anginosus group, the mitis group, the salivarius group, the bovis group, and the mutans group. S. mitis and S. gordonii clustered in the mitis group together with Streptococcus pneumoniae, Streptococcus oralis, Streptococcus sanguis, and Streptococcus parasanguis at levels of sequence homology of more than 96%. Within this group, S. mitis, S. oralis, and S. pneumoniae exhibited more than 99% sequence homology with each other, although the DNA-DNA similarity values for their total chromosome DNAs were less than 60%.
URL: 7537076
Ref #: 82554
Author(s): Chen,C.C.;Teng,L.J.;Chang,T.C.
Journal: J Clin Microbiol
Title: Identification of clinically relevant viridans group streptococci by sequence analysis of the 16S-23S ribosomal DNA spacer region
Volume: 42
Page(s): 2651-7
Year: 2004
Keyword(s): DNA, Ribosomal Spacer/*chemistry Humans Phylogeny Polymerase Chain Reaction RNA, Ribosomal, 16S/*genetics RNA, Ribosomal, 23S/*genetics Sequence Analysis, DNA Viridans Streptococci/classification/genetics/*isolation & purification
Remarks: The feasibility of sequence analysis of the 16S-23S ribosomal DNA (rDNA) intergenic spacer (ITS) for the identification of clinically relevant viridans group streptococci (VS) was evaluated. The ITS regions of 29 reference strains (11 species) of VS were amplified by PCR and sequenced. These 11 species were Streptococcus anginosus, S. constellatus, S. gordonii, S. intermedius, S. mitis, S. mutans, S. oralis, S. parasanguinis, S. salivarius, S. sanguinis, and S. uberis. The ITS lengths (246 to 391 bp) and sequences were highly conserved among strains within a species. The intraspecies similarity scores for the ITS sequences ranged from 0.98 to 1.0, except for the score for S. gordonii strains. The interspecies similarity scores for the ITS sequences varied from 0.31 to 0.93. Phylogenetic analysis of the ITS regions revealed that evolution of the regions of some species of VS is not parallel to that of the 16S rRNA genes. One hundred six clinical isolates of VS were identified by the Rapid ID 32 STREP system (bioMerieux Vitek, Marcy l'Etoile, France) and by ITS sequencing, and the level of disagreement between the two methods was 18% (19 isolates). Most isolates producing discrepant results could be unambiguously assigned to a specific species by their ITS sequences. The accuracy of using ITS sequencing for identification of VS was verified by 16S rDNA sequencing for all strains except strains of S. oralis and S. mitis, which were difficult to differentiate by their 16S rDNA sequences. In conclusion, identification of species of VS by ITS sequencing is reliable and could be used as an alternative accurate method for identification of VS.
URL: 15184447
Ref #: 82526
Author(s): Hoshino,T.;Fujiwara,T.;Kilian,M.
Journal: J Clin Microbiol
Title: Use of phylogenetic and phenotypic analyses to identify nonhemolytic streptococci isolated from bacteremic patients
Volume: 43
Page(s): 6073-85
Year: 2005
Keyword(s): GENBANK/AB199330 GENBANK/AB199331 GENBANK/AB199332 GENBANK/AB199333 GENBANK/AB199334 GENBANK/AB199335 GENBANK/AB199336 GENBANK/AB199337 GENBANK/AB199338 GENBANK/AB199339 GENBANK/AB199340 GENBANK/AB199341 GENBANK/AB199342 GENBANK/AB199343 GENBANK/AB199344 GENBANK/AB199345 GENBANK/AB199346 GENBANK/AB199347 GENBANK/AB199348 GENBANK/AB199349 GENBANK/AB199350 GENBANK/AB199351 GENBANK/AB199352 GENBANK/AB199353 GENBANK/AB199354 GENBANK/AB199355 GENBANK/AB199356 GENBANK/AB199357 GENBANK/AB199358 GENBANK/AB199359 GENBANK/AB199360 GENBANK/AB199361 GENBANK/AB199362 GENBANK/AB199363 GENBANK/AB199364 GENBANK/AB199365 GENBANK/AB199366 GENBANK/AB199367 GENBANK/AB199368 GENBANK/AB199369 GENBANK/AB199370 GENBANK/AB199371 GENBANK/AB199372 GENBANK/AB199373 GENBANK/AB199374 GENBANK/AB199375 GENBANK/AB199376 GENBANK/AB199377 GENBANK/AB199378 GENBANK/AB199379 GENBANK/AB199380 GENBANK/AB199381 GENBANK/AB199382 GENBANK/AB199383 GENBANK/AB199384 GENBANK/AB199385 GENBANK/AB199386 GENBANK/AB199387 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GENBANK/AB200159 GENBANK/AB200160 GENBANK/AB200161 GENBANK/AB200162 GENBANK/AB200163 GENBANK/AB200164 GENBANK/AB200165 GENBANK/AB200166 GENBANK/AB200167 GENBANK/AB218984 GENBANK/AB218985 Bacteremia/*microbiology Bacterial Proteins/genetics *Bacterial Typing Techniques *Hemolysis Humans Molecular Sequence Data Phenotype *Phylogeny Polymerase Chain Reaction/methods Reagent Kits, Diagnostic Sequence Analysis, DNA Species Specificity Streptococcal Infections/microbiology Streptococcus/*classification/genetics/isolation & purification/*physiology
Remarks: The aim of this study was to evaluate molecular and phenotypic methods for the identification of nonhemolytic streptococci. A collection of 148 strains consisting of 115 clinical isolates from cases of infective endocarditis, septicemia, and meningitis and 33 reference strains, including type strains of all relevant Streptococcus species, were examined. Identification was performed by phylogenetic analysis of nucleotide sequences of four housekeeping genes, ddl, gdh, rpoB, and sodA; by PCR analysis of the glucosyltransferase (gtf) gene; and by conventional phenotypic characterization and identification using two commercial kits, Rapid ID 32 STREP and STREPTOGRAM and the associated databases. A phylogenetic tree based on concatenated sequences of the four housekeeping genes allowed unequivocal differentiation of recognized species and was used as the reference. Analysis of single gene sequences revealed deviation clustering in eight strains (5.4%) due to homologous recombination with other species. This was particularly evident in S. sanguinis and in members of the anginosus group of streptococci. The rate of correct identification of the strains by both commercial identification kits was below 50% but varied significantly between species. The most significant problems were observed with S. mitis and S. oralis and 11 Streptococcus species described since 1991. Our data indicate that identification based on multilocus sequence analysis is optimal. As a more practical alternative we recommend identification based on sodA sequences with reference to a comprehensive set of sequences that is available for downloading from our server. An analysis of the species distribution of 107 nonhemolytic streptococci from bacteremic patients showed a predominance of S. oralis and S. anginosus with various underlying infections.
URL: 16333101
Ref #: 17297
Author(s): Glazunova,O.O.;Raoult,D.;Roux,V.
Journal: Int J Syst Evol Microbiol
Title: Streptococcus massiliensis sp. nov., isolated from a patient blood culture
Volume: 56
Page(s): 1127-31
Year: 2006
Keyword(s): GENBANK/AY769997 GENBANK/AY769998 GENBANK/AY769999 GENBANK/AY770000 GENBANK/AY770001 GENBANK/AY770002 GENBANK/DQ132983 GENBANK/DQ132984 GENBANK/DQ132985 GENBANK/DQ132986 GENBANK/DQ132987 GENBANK/DQ232458 GENBANK/DQ232560 Bacterial Proteins/genetics Bacterial Typing Techniques Blood/*microbiology DNA, Bacterial/chemistry/genetics DNA, Ribosomal/chemistry/genetics DNA-Directed RNA Polymerases/genetics Genes, rRNA Humans Male Middle Aged Molecular Sequence Data Phylogeny RNA, Bacterial/genetics RNA, Ribosomal, 16S/genetics Streptococcal Infections/*microbiology Superoxide Dismutase/genetics Viridans Streptococci/*classification/genetics/*isolation & purification/physiology
Remarks: An unidentified strain of the viridans group of streptococci was isolated from a human blood sample. It was distinguished from all other recognized species of the Streptococcus sanguinis group by several biochemical characteristics. Phylogenetic analysis based on 16S rRNA gene sequence comparisons clustered this strain with Streptococcus ferus (mutans group) but phylogenetic analysis based on rpoB and sodA gene sequence comparisons included it in the S. sanguinis group. The isolate showed 95.4 and 95.2 % 16S rRNA gene sequence similarity to S. ferus and S. sanguinis, respectively, confirming it as belonging to a novel taxon, for which the name Streptococcus massiliensis sp. nov. is proposed. The type strain is 4401825T (=CIP 108498T=CCUG 49690T).
URL: 16627666
Ref #: 13406
Author(s): Kawamura,Y.;Hou,X.G.;Sultana,F.;Miura,H.;Ezaki,T.
Journal: Int J Syst Bacteriol
Title: Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus
Volume: 45
Page(s): 406-8
Year: 1995
Keyword(s): GENBANK/D38482 GENBANK/D38483 DNA, Bacterial/*genetics Molecular Sequence Data Phylogeny RNA, Bacterial/*genetics RNA, Ribosomal, 16S/*genetics Streptococcus/*classification/genetics
Remarks: We determined the 16S rRNA sequences of the type strains of Streptococcus mitis and Streptococcus gordonii and calculated the phylogenetic distances between those organisms and other members of the genus Streptococcus. The viridans group streptococci were separated into five phylogenetic groups; we named these groups the anginosus group, the mitis group, the salivarius group, the bovis group, and the mutans group. S. mitis and S. gordonii clustered in the mitis group together with Streptococcus pneumoniae, Streptococcus oralis, Streptococcus sanguis, and Streptococcus parasanguis at levels of sequence homology of more than 96%. Within this group, S. mitis, S. oralis, and S. pneumoniae exhibited more than 99% sequence homology with each other, although the DNA-DNA similarity values for their total chromosome DNAs were less than 60%.
URL: 95244327
Ref #: 3965
Author(s): Kilian,M.;Mikkelsen,L.;Henrichsen,J.
Journal: Int. J. Syst. Bacteriol.
Title: Taxonomic study of viridans streptococci: Description of Streptococcus gordonii sp. nov. and emended descriptions of Streptococcus sanguis (White and Niven 1946), Streptococcus oralis (Bridge and Sneath 1982), and Streptococcus mitis (Andrewes and Horder
Volume: 39
Page(s): 471-484
Year: 1989
Ref #: 3969
Author(s): Schmidhuber,S.;Kilpper-Bälz,R.;Schleifer,K.H.
Journal: System. Appl. Microbiol.
Title: A taxonomic study of Streptococcus mitis, S. oralis, and S. sanguis.
Volume: 10
Page(s): 74-77
Year: 1987
Data: Type strain / ATCC in 1949 / Subacute bacterial endocarditis / Type I-II / Hare, R. (1935) p. Path. Bact. 41, 499 / White, J. C. & Niven, C. F. Jr. (1946) J. Bact. 51, 717 / Washburn, M. R. et al. (1946) J. Bact. 51, 723 / Kilian, M. et al. (1989) Int. J. syst. Bact. 39, 471
Accession Date: 01/01/1949
History: ATCC ,WASHINGTON D C USA
Authority: Kilian et al. 1989
Depositor: ATCC
Taxonomy: TaxLink: S3650 (Streptococcus gordonii kilian et al. 1989) - Date of change: 16/06/2007 by NCTCUp to 16/06/2007: G2819 (Streptococcus Rosenbach 1884) - Date of change: 5/02/2003
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