Bacteria and Mycoplasmas detail

Conditions of Supply of Microbial Pathogens: Safety

Bacteria Collection: Helicobacter fennelliae

NCTC Number:

NCTC 11612

Current Name:

Helicobacter fennelliae

Original Strain Reference:

CLO-231

Other Collection No:

ATCC 35684; CCUG 18820; CLO-231; DSM 7491; LMG 7546

Previous Catalogue Name:

Helicobacter fennelliae

Type Strain:

Yes

Family:

Helicobacteraceae

Hazard Group (ACDP):

Release Restrictions:

Terms & Conditions of Supply of Microbial Pathogens: Safety

Conditions for growth on solid media:

Columbia blood agar, 48 hours, 37°C, microaerophilic

Conditions for growth on liquid media:

nutrient broth,37, microaerophilic

Isolated From:

human, rectal swab homosexual

Whole Genome Sequence:

http://www.ebi.ac.uk/ena/data/view/ERS1345971

16S rRNA Gene Sequence:

>gb|AF348746|NCTC 11612|Helicobacter fennelliae strain NCTC 11612 16S ribosomal RNA gene,partial sequence.| agtgaacgctggcgt... >gb|AF348747|LMG 7546|Helicobacter fennelliae strain LMG 7546 16S ribosomal RNA gene,partial sequence.| agtgaacgctggcgt...

23S rRNA Gene Sequence:

>gb|AY596237|CCUG 18820|Helicobacter fennelliae strain CCUG 18820 23S ribosomal RNA gene,partial sequence.| aggcgatgaaggacg...

Bibliography:

FENNELL C L ET AL 1984 J INFECT DIS 149 58

Extended Bibliography:

Show bibliography

Ref #:	95502
Author(s):	Kuhnert,P.;Burnens,A.P.
Journal:	J Clin Microbiol
Title:	Misidentifying Helicobacter cinadei
Volume:	39
Page(s):	2751-2
Year:	2001
Keyword(s):	DNA-Directed RNA Polymerases/genetics Helicobacter/classification/genetics Molecular Sequence Data RNA, Ribosomal, 16S/genetics
URL:	11446363

Ref #:	50052
Author(s):	Dewhirst,F.E.;Shen,Z.;Scimeca,M.S.;Stokes,L.N.;Boumenna,T.;Chen,T.;Paster,B.J.;Fox,J.G.
Journal:	J Bacteriol
Title:	Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics
Volume:	187
Page(s):	6106-18
Year:	2005
Keyword(s):	Base Sequence DNA Primers Helicobacter/classification/genetics Phylogeny Polymerase Chain Reaction RNA, Bacterial/genetics RNA, Ribosomal, 16S/genetics RNA, Ribosomal, 23S/*genetics
Remarks:	Analysis of 16S rRNA gene sequences has become the primary method for determining prokaryotic phylogeny. Phylogeny is currently the basis for prokaryotic systematics. Therefore, the validity of 16S rRNA gene-based phylogenetic analyses is of fundamental importance for prokaryotic systematics. Discrepancies between 16S rRNA gene analyses and DNA-DNA hybridization and phenotypic analyses have been noted in the genus Helicobacter. To clarify these discrepancies, we sequenced the 23S rRNA genes for 55 helicobacter strains representing 41 taxa (>2,700 bases per sequence). Phylogenetic-tree construction using neighbor-joining, parsimony, and maximum likelihood methods for 23S rRNA gene sequence data yielded stable trees which were consistent with other phenotypic and genotypic methods. The 16S rRNA gene sequence-derived trees were discordant with the 23S rRNA gene trees and other data. Discrepant 16S rRNA gene sequence data for the helicobacters are consistent with the horizontal transfer of 16S rRNA gene fragments and the creation of mosaic molecules with loss of phylogenetic information. These results suggest that taxonomic decisions must be supported by other phylogenetically informative macromolecules, such as the 23S rRNA gene, when 16S rRNA gene-derived phylogeny is discordant with other credible phenotypic and genotypic methods. This study found Wolinella succinogenes to branch with the unsheathed-flagellum cluster of helicobacters by 23S rRNA gene analyses and whole-genome comparisons. This study also found intervening sequences (IVSs) in the 23S rRNA genes of strains of 12 Helicobacter species. IVSs were found in helices 10, 25, and 45, as well as between helices 31' and 27'. Simultaneous insertion of IVSs at three sites was found in H. mesocricetorum.
URL:	16109952

Ref #:	12862
Author(s):	Kuhnert,P.;Burnens,A.P.
Journal:	J Clin Microbiol
Title:	Misidentifying Helicobacter cinadei
Volume:	39
Page(s):	2751-2
Year:	2001
Keyword(s):	DNA-Directed RNA Polymerases/genetics Helicobacter/classification/genetics Molecular Sequence Data RNA, Ribosomal, 16S/genetics
URL:	21339166

Ref #:	4220
Author(s):	Vandamme,P.;Falsen,E.;Rossau,R.;Hoste,B.;Segers,P.;Tytgat,R.;DeLey,J.
Journal:	Int. J. Syst. Bacteriol.
Title:	Revision of Campylobacter, Helicobacter, and Wolinella taxonomy: emendation of generic descriptions and proposal of Arcobacter gen. nov.
Volume:	41
Page(s):	88-103
Year:	1991

Ref #:	4332
Author(s):	Moss,C.W.;Lambert-Fair,M.A.;Nicholson,M.A.;Guerrant,G.
Journal:	J. Clin. Microbiol.
Title:	Isoprenoid quinones of Campylobacter cryaerophila, C. cinaedi, C. fennelliae, C. hyointestinalis, C. pylori, and "C. upsaliensis".
Volume:	28
Page(s):	395-397
Year:	1990

Ref #:	4715
Author(s):	Totten,P.A.;Fennell,C.L.;Tenover,F.C.;Wezenberg,J.M.;Perine,P.L.;Stamm,W.E.;Holmes,K.K.
Journal:	J. Infect. Dis.
Title:	Campylobacter cinaedi (sp. nov.) and Campylobacter fennelliae (sp. nov.): Two new Campylobacter species associated with enteric disease in homosexual men.
Volume:	151
Page(s):	131-139
Year:	1985

Ref #:	4882
Author(s):	Fennell,C.L.;Totten,P.A.;Quinn,T.C.;Patton,D.L.;Holmes,K.K.;Stamm,W.E.
Journal:	J. Infect. Dis.
Title:	Characterization of Campylobacter-like organisms isolated from homosexual men.
Volume:	149
Year:	1984

Ref #:	4883
Author(s):	Han,Y.-H.;Smibert,R.M.;Krieg,N.R.
Journal:	Int. J. Syst. Bacteriol.
Title:	Occurrence of sheathed flagella in Campylobacter cinaedi and Campylobacter fennelliae.
Volume:	39
Page(s):	488-490
Year:	1989

Data:

(CCUG 18820, ATCC 35684) Type strain / F.J. Bolton, PHL Preston in 1985 / C.L. Fennell, Seattle / Rectal swab, homosexual / Fennell, C.L. et al. (1984) J. infect. Dis. 149, 58 / Totten, P.A. et al. (1985) J. infect. Dis. 151, 131 / CLO-2

Accession Date:

01/01/1985

History:

FENNELL C L SEATTLE - BOLTON F J PHL PRESTON

Authority:

(Totten et al. 1985) Vandamme et al. 1991

Depositor:

BOLTON F J

Taxonomy:

TaxLink: S3967 (Campylobacter fennelliae) - Date of change: 5/02/2003

Biosafety Responsibility:

It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country

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Note:

The Culture Collections hold cell cultures, bacteria, fungi and virus strains from worldwide sources. Our scientists ensure that the identification of the cultures is correct and they remain unchanged from when they are first deposited with the Collection. Nevertheless, some of the data we provide about the cultures is supplied by the person depositing the strains and, although we have multiple checking procedures in place, we cannot always verify all their data. Please note that the Culture Collections cannot be held responsible for any inaccuracies in the data provided by the depositors.

Cultures supplied by Culture Collections are to be used as controls for microbiology testing and for research purposes only. Please view the Terms & Conditions of Supply for more information.