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Bacteria Collection: Listonella pelagia

NCTC Number: NCTC 11316
Current Name: Listonella pelagia
Original Strain Reference: ATCC 25916
Other Collection No: ATCC 25916; CAIM 324; CCUG 16398; CECT 4202; CIP 102762; JCM 21191; LMG 3897; NBRC 15639; NCCB 76038; NCIMB 1900
Previous Catalogue Name: Beneckea pelagia
Type Strain: Yes
Family: Vibrionaceae
Release Restrictions: Terms & Conditions of Supply of Microbial Pathogens: Safety
Conditions for growth on solid media: Columbia blood agar, 48 hours, 22°C, aerobic
Conditions for growth on liquid media: nutrient broth,37, facultative anaerobe
Isolated From: salt water/mud;seawater enriched with succinate
Whole Genome Sequence: http://www.ebi.ac.uk/ena/data/view/ERS1247840
16S rRNA Gene Sequence: >gb|X74722|ATCC 25916T|V.pelagius (ATCC 25916T) gene for 16S ribosomal RNA.| attgaagagtttgat... >gb|Z22991|ATCC 25916|V.pelagius (ATCC 25916) gene for 16S ribosomal RNA (partial).| actcctacgggaggc... >gb|AB255729|ATCC 25916|Listonella pelagia DNA, 16S-23S rRNA intergenic spacer and 23SrRNA, partial sequence, strain: ATCC 25916.| tagctctttaacaat... >gb|D11229|ATCC25916|Listonella pelagia 16S rRNA.| aatgcgtagagatct... >gb|D11180|ATCC25916|Listonella pelagia 16S rRNA.| ctggtctgagaggat...
23S rRNA Gene Sequence: >gb|AB255729|ATCC 25916|Listonella pelagia DNA, 16S-23S rRNA intergenic spacer and 23SrRNA, partial sequence, strain: ATCC 25916.| tagctctttaacaat...
Bibliography: BAUMANN P ET AL 1971 J BACT 107 291
Extended Bibliography: showhide Show bibliography
Ref #: 93196
Author(s): Ruimy,R.;Breittmayer,V.;Elbaze,P.;Lafay,B.;Boussemart,O.;Gauthier,M.;Christen,R.
Journal: Int J Syst Bacteriol
Title: Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences
Volume: 44
Page(s): 416-26
Year: 1994
Keyword(s): GENBANK/X74674 GENBANK/X74675 GENBANK/X74676 GENBANK/X74677 GENBANK/X74678 GENBANK/X74679 GENBANK/X74680 GENBANK/X74681 GENBANK/X74682 GENBANK/X74683 GENBANK/X74684 GENBANK/X74685 GENBANK/X74686 GENBANK/X74687 GENBANK/X74688 GENBANK/X74689 GENBANK/X74690 GENBANK/X74691 GENBANK/X74692 GENBANK/X74693 GENBANK/X74694 GENBANK/X74695 GENBANK/X74696 GENBANK/X74697 GENBANK/X74698 GENBANK/X74699 GENBANK/X74700 GENBANK/X74701 GENBANK/X74702 GENBANK/X74703 Aeromonas/classification/genetics Photobacterium/classification/genetics *Phylogeny Plesiomonas/classification/genetics RNA, Bacterial/*genetics RNA, Ribosomal/*genetics Sequence Homology, Nucleic Acid Species Specificity Vibrio/classification/genetics Vibrionaceae/*classification/*genetics
Remarks: We sequenced nearly complete small-subunit rRNAs of 54 reference strains belonging to the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas. We then performed a phylogenetic analysis by comparing the sequences which we obtained with all other known sequences for bacteria belonging to the gamma subgroup of the Proteobacteria (thus providing a data base consisting of 70 sequences for the genera investigated), using methods such as neighbor joining, maximum likelihood, and maximum parsimony, as well as bootstrap, to assess the robustness of each topology. Our results confirmed that the family Vibrionaceae should include only Photobacterium and Vibrio species (but not Vibrio marinus); that Aeromonas species deserve family rank; and that Plesiomonas shigelloides is linked to the family Enterobacteriaceae. The genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas, together with the family Enterobacteriaceae, the family Pasteurellaceae, and probably the genus Alteromonas, form a robust monophyletic unit within the gamma 3 subgroup of the Proteobacteria.
URL: 7520733
Ref #: 72321
Author(s): Kita-Tsukamoto,K.;Oyaizu,H.;Nanba,K.;Simidu,U.
Journal: Int J Syst Bacteriol
Title: Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences
Volume: 43
Page(s): 8-19
Year: 1993
Keyword(s): GENBANK/D11169 GENBANK/D11170 GENBANK/D11171 GENBANK/D11172 GENBANK/D11173 GENBANK/D11174 GENBANK/D11175 GENBANK/D11176 GENBANK/D11177 GENBANK/D11178 GENBANK/D11179 GENBANK/D11180 GENBANK/D11181 GENBANK/D11182 GENBANK/D11183 GENBANK/D11184 GENBANK/D11185 GENBANK/D11186 GENBANK/D11187 GENBANK/D11188 GENBANK/D11189 GENBANK/D11190 GENBANK/D11191 GENBANK/D11192 GENBANK/D11193 GENBANK/D11194 GENBANK/D11195 GENBANK/D11196 GENBANK/D11197 GENBANK/D11198 etc. Base Sequence Molecular Sequence Data *Phylogeny RNA, Ribosomal, 16S/classification/*genetics/*isolation & purification Seawater Sequence Homology, Nucleic Acid Vibrionaceae/*classification/*genetics/metabolism *Water Microbiology
Remarks: The phylogenetic relationships of 50 reference strains, mostly marine bacteria which require Na+ for growth, were determined on the basis of 600 16S rRNA nucleotides by using reverse transcriptase sequencing. Strains belonging to 10 genera were included (four genera of the family Vibrionaceae, the genus Aeromonas of the family Aeromonadaceae, and the genera Alteromonas, Marinomonas, Shewanella, Pseudomonas, and Deleya). The sequences were aligned, the similarity values and evolutionary distance values were determined, and a phylogenetic tree was constructed by using the neighbor-joining method. On the basis of our results, the family Vibrionaceae was separated into at least seven groups (genera and families). Vibrio marinus clearly was on a line of descent that was remote from other vibrios. As determined by the similarity and evolutionary distance values, V. marinus is more distantly related to the family Vibrionaceae than the members of the Aeromonadaceae are. Also, Vibrio cholerae strains formed a separate group with Vibrio mimicus at the genus level. Of 30 species of the Vibrionaceae, 17 formed a large phylogenetic cluster. The genus Listonella was found to be a heterogeneous group, and the species were distributed in various subgroups of the Vibrionaceae. The separation of the family Aeromonadaceae from the family Vibrionaceae and the separation of the genera Marinomonas and Shewanella from the genus Alteromonas were confirmed in this phylogenetic study. However, a marine Pseudomonas species, Pseudomonas nautica, was clearly separated from two terrestrial Pseudomonas species. Each group that was separated by the phylogenetic analysis had characteristic 16S rRNA sequence patterns that were common only to species in that group. Therefore, the characteristic sequences described in this paper may be useful for identification purposes.
URL: 8427811
Ref #: 12044
Author(s): Ruimy,R.;Breittmayer,V.;Elbaze,P.;Lafay,B.;Boussemart,O.;Gauthier,M.;Christen,R.
Journal: Int J Syst Bacteriol
Title: Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences
Volume: 44
Page(s): 416-26
Year: 1994
Keyword(s): GENBANK/X74674 GENBANK/X74675 GENBANK/X74676 GENBANK/X74677 GENBANK/X74678 GENBANK/X74679 GENBANK/X74680 GENBANK/X74681 GENBANK/X74682 GENBANK/X74683 GENBANK/X74684 GENBANK/X74685 GENBANK/X74686 GENBANK/X74687 GENBANK/X74688 GENBANK/X74689 GENBANK/X74690 GENBANK/X74691 GENBANK/X74692 GENBANK/X74693 GENBANK/X74694 GENBANK/X74695 GENBANK/X74696 GENBANK/X74697 GENBANK/X74698 GENBANK/X74699 GENBANK/X74700 GENBANK/X74701 GENBANK/X74702 GENBANK/X74703 Aeromonas/classification/genetics Comparative Study Photobacterium/classification/genetics *Phylogeny Plesiomonas/classification/genetics RNA, Bacterial/*genetics RNA, Ribosomal/*genetics Sequence Homology, Nucleic Acid Species Specificity Support, Non-U.S. Gov't Vibrio/classification/genetics Vibrionaceae/*classification/*genetics
Remarks: We sequenced nearly complete small-subunit rRNAs of 54 reference strains belonging to the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas. We then performed a phylogenetic analysis by comparing the sequences which we obtained with all other known sequences for bacteria belonging to the gamma subgroup of the Proteobacteria (thus providing a data base consisting of 70 sequences for the genera investigated), using methods such as neighbor joining, maximum likelihood, and maximum parsimony, as well as bootstrap, to assess the robustness of each topology. Our results confirmed that the family Vibrionaceae should include only Photobacterium and Vibrio species (but not Vibrio marinus); that Aeromonas species deserve family rank; and that Plesiomonas shigelloides is linked to the family Enterobacteriaceae. The genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas, together with the family Enterobacteriaceae, the family Pasteurellaceae, and probably the genus Alteromonas, form a robust monophyletic unit within the gamma 3 subgroup of the Proteobacteria.
URL: 94347604
Data: Type strain / ATCC in 1979 / P. Baumann / Seawater enriched with succinate / Baumann, P. et al. (1971) J. Bact. 107, 291
Accession Date: 01/01/1979
History: ISOLATED BY BAUMANN P
Authority: (Baumann et al. 1971) MacDonell and Colwell 1986
Depositor: ATCC
Taxonomy: TaxLink: S1698 (Beneckea pelagia) - Date of change: 5/02/2003
Biosafety Responsibility: It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country

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