NCTC Number: |
NCTC 10994
|
Current Name: |
Rhodococcus coprophilus
|
Original Strain Reference: |
CUB 687
|
Other Collection No: |
ATCC 29080; CUB 687; DSM 43347; IMET 7375; JCM 3200; LMG 5357; NCIB 11211
|
Previous Catalogue Name: |
Rhodococcus coprophilus
|
Type Strain: |
Yes
|
Family: |
Nocardiaceae
|
Release Restrictions: |
Terms & Conditions of Supply of Microbial Pathogens: Safety
|
Conditions for growth on solid media: |
Columbia blood agar, 48-96 hours, 30°C, aerobic
|
Whole Genome Sequence: |
http://www.ebi.ac.uk/ena/data/view/ERS1324133
|
16S rRNA Gene Sequence: |
>gb|X81928|ATCC 29080T|R.coprophilus 16S rRNA gene (ATCC 29080T).| acgaacgctggcggc... >gb|X80626|DSM43347T|R.coprophilus 16S rDNA.| cctggctcaggacga... >gb|X80626|TYPE STRAIN: DSM43347|Rhodococcus coprophilus 16S rRNA gene, strain DSM43347T.| cctggctcaggacga...
|
Miscellaneous Sequence Data: |
>gb|AB014271|ATCC 29080|Rhodococcus coprophilus gyrB gene for DNA gyrase B subunit, partialcds, strain ATCC 29080.| tccgatgcgtacgcc...
|
Extended Bibliography: |
Show bibliography
Ref #: |
95490 |
Author(s): |
Ruimy,R.;Riegel,P.;Boiron,P.;Monteil,H.;Christen,R. |
Journal: |
Int J Syst Bacteriol |
Title: |
Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences |
Volume: |
45 |
Page(s): |
740-6 |
Year: |
1995 |
Keyword(s): |
GENBANK/X81904
GENBANK/X81905
GENBANK/X81906
GENBANK/X81907
GENBANK/X81908
GENBANK/X81909
GENBANK/X81910
GENBANK/X81912
GENBANK/X81913
GENBANK/X81914
GENBANK/X81915
GENBANK/X81916
GENBANK/X81917
GENBANK/X81918
GENBANK/X81919
GENBANK/X81920
GENBANK/X81921
GENBANK/X81922
GENBANK/X81923
GENBANK/X81924
GENBANK/X81925
GENBANK/X81926
GENBANK/X81927
GENBANK/X81928
GENBANK/X81929
GENBANK/X81930
GENBANK/X81931
GENBANK/X81932
GENBANK/X81933
GENBANK/X81934
Base Sequence
Corynebacterium/+ACo-classification/genetics
DNA, Bacterial/+ACo-chemistry
DNA, Ribosomal/+ACo-chemistry
Molecular Sequence Data
Phylogeny
|
Remarks: |
We determined almost complete small-subunit ribosomal DNA sequences of 50 reference strains belonging to the genera Corynebacterium, Rhodococcus, and Gordona and compared these sequences with previously published sequences. Three phylogenetic methods (the neighbor-joining, maximum-likelihood, and maximum-parsimony methods), as well as a bootstrap analysis, were used to assess the robustness of each topology which we obtained. The results of comparative phylogenetic analyses confirmed that the genera Corynebacterium, Dietzia, Gordona, Mycobacterium, Nocardia, Tsukamurella, and Turicella form a monophyletic taxon within the phylum containing the high-Gcontent gram-positive bacteria. The genus Corynebacterium appeared to be a monophyletic unit whose members could be divided into four major clusters. The validity of the genus Turicella is doubtful since members of this genus clearly belong to the genus Corynebacterium. The variability of chemotaxonomic characteristics within the genus Corynebacterium suggests that small-subunit ribosomal DNA sequence analysis is probably the most straightforward method for confirming that a bacterium belongs to this genus. |
URL: |
7547293 |
|
Ref #: |
12499 |
Author(s): |
Ruimy,R.;Riegel,P.;Boiron,P.;Monteil,H.;Christen,R. |
Journal: |
Int J Syst Bacteriol |
Title: |
Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences |
Volume: |
45 |
Page(s): |
740-6 |
Year: |
1995 |
Keyword(s): |
GENBANK/X81904
GENBANK/X81905
GENBANK/X81906
GENBANK/X81907
GENBANK/X81908
GENBANK/X81909
GENBANK/X81910
GENBANK/X81912
GENBANK/X81913
GENBANK/X81914
GENBANK/X81915
GENBANK/X81916
GENBANK/X81917
GENBANK/X81918
GENBANK/X81919
GENBANK/X81920
GENBANK/X81921
GENBANK/X81922
GENBANK/X81923
GENBANK/X81924
GENBANK/X81925
GENBANK/X81926
GENBANK/X81927
GENBANK/X81928
GENBANK/X81929
GENBANK/X81930
GENBANK/X81931
GENBANK/X81932
GENBANK/X81933
GENBANK/X81934
Base Sequence
Corynebacterium/+ACo-classification/genetics
DNA, Bacterial/+ACo-chemistry
DNA, Ribosomal/+ACo-chemistry
Molecular Sequence Data
Phylogeny
|
Remarks: |
We determined almost complete small-subunit ribosomal DNA sequences of 50 reference strains belonging to the genera Corynebacterium, Rhodococcus, and Gordona and compared these sequences with previously published sequences. Three phylogenetic methods (the neighbor-joining, maximum-likelihood, and maximum-parsimony methods), as well as a bootstrap analysis, were used to assess the robustness of each topology which we obtained. The results of comparative phylogenetic analyses confirmed that the genera Corynebacterium, Dietzia, Gordona, Mycobacterium, Nocardia, Tsukamurella, and Turicella form a monophyletic taxon within the phylum containing the high-Gcontent gram-positive bacteria. The genus Corynebacterium appeared to be a monophyletic unit whose members could be divided into four major clusters. The validity of the genus Turicella is doubtful since members of this genus clearly belong to the genus Corynebacterium. The variability of chemotaxonomic characteristics within the genus Corynebacterium suggests that small-subunit ribosomal DNA sequence analysis is probably the most straightforward method for confirming that a bacterium belongs to this genus. |
URL: |
96016727 |
|
Ref #: |
1300 |
Author(s): |
Skerman,V.B.D.;McGowan,V.;Sneath,P.H.A.(ed) |
Journal: |
Int. J. Syst. Bacteriol. |
Title: |
Approved Lists of Bacterial Names. |
Volume: |
30 |
Page(s): |
225-420 |
Year: |
1980 |
|
Ref #: |
2214 |
Author(s): |
Rowbotham,T.J.;Cross,T. |
Journal: |
J. Gen. Microbiol. |
Title: |
Rhodococcus coprophilus sp. nov.: an aerobic nocardioform actinomycete belonging to the "rhodochrous" complex. |
Volume: |
100 |
Page(s): |
123-138 |
Year: |
1977 |
|
|
Data: |
(ATCC 29080, CBS 313. 75, IMET 47375, CCM 2723, NCDO 2041) Type strain / T. Cross, Bradford in 1975 / Pond mud, in 1971 / Cross, T. & Rowbotham, T. J. (1974) Proc. 1st. Intl. Conference, Biol. Nocardiae p. 48 / Rowbotham, T. J. & Cross, T. (1977) J. gen. Microbiol. 100, 123
|
Accession Date: |
04/02/2003
|
Authority: |
Rowbotham and Cross 1979 (AL)
|
Taxonomy: |
TaxLink: S2553 (Rhodococcus coprophilus rowbotham and cross 1979) - Date of change: 16/06/2007 by NCTCUp to 16/06/2007: ? (NCTC 10994) - Date of change: 04/02/2003
|
Biosafety Responsibility: |
It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country
|
The Culture Collections hold cell cultures, bacteria, fungi and virus strains from worldwide sources. Our scientists ensure that the identification of the cultures is correct and they remain unchanged from when they are first deposited with the Collection. Nevertheless, some of the data we provide about the cultures is supplied by the person depositing the strains and, although we have multiple checking procedures in place, we cannot always verify all their data. Please note that the Culture Collections cannot be held responsible for any inaccuracies in the data provided by the depositors.
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