| Extended Bibliography: |
Show bibliography
| Ref #: |
30826 |
| Author(s): |
Viallard,V.;Poirier,I.;Cournoyer,B.;Haurat,J.;Wiebkin,S.;Ophel-Keller,K.;Balandreau,J. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia |
| Volume: |
48 Pt 2 |
| Page(s): |
549-63 |
| Year: |
1998 |
| Keyword(s): |
GENBANK/U96927
GENBANK/U96928
GENBANK/U96929
GENBANK/U96930
GENBANK/U96931
GENBANK/U96932
GENBANK/U96933
GENBANK/U96934
GENBANK/U96935
GENBANK/U96936
GENBANK/U96937
GENBANK/U96938
GENBANK/U96939
GENBANK/U96940
GENBANK/U96941
Base Sequence
Burkholderia/*classification/genetics/metabolism
Carbohydrate Metabolism
DNA, Bacterial
Fatty Acids/analysis
Molecular Sequence Data
Nucleic Acid Hybridization
Phenotype
Phylogeny
Pseudomonas/*classification
Triticum/microbiology
Zea mays/microbiology
|
| Remarks: |
In a survey of soil and wheat or maize rhizoplane bacteria isolated using a medium containing azelaic acid and tryptamine as sole carbon and nitrogen sources, respectively, a large proportion of Burkholderia-like bacteria were found. Among them, a homogeneous group of strains was identifiable based on phenotypic properties, fatty acid composition, DNA-DNA hybridizations and 16S rDNA sequences. According to molecular data, this group belongs to the genus Burkholderia but its weak similarity to previously described species suggests that it belongs to a novel species. Closest 16S rDNA phylogenetic neighbours of this species are Burkholderia caryophylli and two previously named Pseudomonas species which clearly appear to be part of the Burkholderia genus and were thus named Burkholderia glathei comb. nov. and Burkholderia phenazinium comb. nov. Strains of the new species are oxidase- and catalase-positive, produce indole and gelatinase, and use L-xylose, lactose, rhamnose, trehalose, D-lyxose, L-arabitol, xylitol and D-raffinose as sole carbon source. This novel taxon is named Burkholderia graminis. In the course of this study, [Pseudomonas] pyrrocinia also proved to be a member of the Burkholderia genus. |
| URL: |
9731297 |
|
| Ref #: |
31060 |
| Author(s): |
LiPuma,J.J.;Dulaney,B.J.;McMenamin,J.D.;Whitby,P.W.;Stull,T.L.;Coenye,T.;Vandamme,P. |
| Journal: |
J Clin Microbiol |
| Title: |
Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients |
| Volume: |
37 |
| Page(s): |
3167-70 |
| Year: |
1999 |
| Keyword(s): |
GENBANK/AF097530
GENBANK/AF097531
GENBANK/AF097532
GENBANK/AF097533
GENBANK/AF097534
Base Sequence
Burkholderia cepacia/classification/*isolation & purification
Cystic Fibrosis/*microbiology
Humans
Molecular Sequence Data
Polymerase Chain Reaction/*methods
RNA, Ribosomal, 16S/*genetics
RNA, Ribosomal, 23S/*genetics
Sensitivity and Specificity
|
| Remarks: |
PCR assays targeting rRNA genes were developed to identify species (genomovars) within the Burkholderia cepacia complex. Each assay was tested with 177 bacterial isolates that also underwent taxonomic analysis by whole-cell protein profile. These isolates were from clinical and environmental sources and included 107 B. cepacia complex strains, 23 Burkholderia gladioli strains, 20 Ralstonia pickettii strains, 10 Pseudomonas aeruginosa strains, 8 Stenotrophomonas maltophilia strains, and 9 isolates belonging to nine other species. The sensitivity and specificity of the 16S rRNA-based assay for Burkholderia multivorans (genomovar II) were 100 and 99%, respectively; for Burkholderia vietnamiensis (genomovar V), sensitivity and specificity were 87 and 92%, respectively. An assay based on 16S and 23S rRNA gene analysis of B. cepacia ATCC 25416 (genomovar I) was useful in identifying genomovars I, III, and IV as a group (sensitivity, 100%, and specificity, 99%). Another assay, designed to be specific at the genus level, identified all but one of the Burkholderia and Ralstonia isolates tested (sensitivity, 99%, and specificity, 96%). The combined use of these assays offers a significant improvement over previously published PCR assays for B. cepacia. |
| URL: |
10488171 |
|
| Ref #: |
31033 |
| Author(s): |
Maeda,Y.;Shinohara,H.;Kiba,A.;Ohnishi,K.;Furuya,N.;Kawamura,Y.;Ezaki,T.;Vandamme,P.;Tsushima,S.;Hikichi,Y. |
| Journal: |
Int J Syst Evol Microbiol |
| Title: |
Phylogenetic study and multiplex PCR-based detection of Burkholderia plantarii, Burkholderia glumae and Burkholderia gladioli using gyrB and rpoD sequences |
| Volume: |
56 |
| Page(s): |
1031-8 |
| Year: |
2006 |
| Keyword(s): |
GENBANK/AB190570
GENBANK/AB190571
GENBANK/AB190572
GENBANK/AB190573
GENBANK/AB190574
GENBANK/AB190575
GENBANK/AB190576
GENBANK/AB190577
GENBANK/AB190578
GENBANK/AB190579
GENBANK/AB190580
GENBANK/AB190581
GENBANK/AB190582
GENBANK/AB190583
GENBANK/AB190584
GENBANK/AB190585
GENBANK/AB190586
GENBANK/AB190587
GENBANK/AB190588
GENBANK/AB190589
GENBANK/AB190590
GENBANK/AB190591
GENBANK/AB190592
GENBANK/AB190593
GENBANK/AB190594
GENBANK/AB190595
GENBANK/AB190596
GENBANK/AB190597
GENBANK/AB190598
GENBANK/AB190599
GENBANK/AB190600
GENBANK/AB190601
GENBANK/AB190602
GENBANK/AB190603
GENBANK/AB190604
GENBANK/AB190605
GENBANK/AB190606
GENBANK/AB190607
GENBANK/AB190608
GENBANK/AB190609
GENBANK/AB190610
GENBANK/AB190611
GENBANK/AB190612
GENBANK/AB190613
GENBANK/AB190614
GENBANK/AB190615
GENBANK/AB190616
GENBANK/AB190617
GENBANK/AB190618
GENBANK/AB190619
GENBANK/AB190620
GENBANK/AB190621
GENBANK/AB190622
GENBANK/AB190623
GENBANK/AB190624
GENBANK/AB190625
GENBANK/AB190626
GENBANK/AB190627
GENBANK/AB190628
GENBANK/AB190629
GENBANK/AB190630
GENBANK/AB190631
GENBANK/AB190632
GENBANK/AB190633
GENBANK/AB190634
GENBANK/AB190635
GENBANK/AB190636
GENBANK/AB190637
GENBANK/AB190638
GENBANK/AB190639
GENBANK/AB190640
GENBANK/AB190641
GENBANK/AB190642
GENBANK/AB190643
GENBANK/AB190644
GENBANK/AB190645
GENBANK/AB190646
GENBANK/AB190647
GENBANK/AB190648
GENBANK/AB190649
GENBANK/AB190650
GENBANK/AB190651
GENBANK/AB190652
GENBANK/AB190653
GENBANK/AB190654
GENBANK/AB190655
GENBANK/AB190656
GENBANK/AB190657
GENBANK/AB190658
GENBANK/AB190659
GENBANK/AB190660
GENBANK/AB190661
GENBANK/AB190662
GENBANK/AB190663
GENBANK/AB190664
GENBANK/AB190665
GENBANK/AB190666
GENBANK/AB190667
GENBANK/AB190668
GENBANK/AB190669
GENBANK/AB190670
GENBANK/AB190671
GENBANK/AB190672
GENBANK/AB190673
GENBANK/AB190674
GENBANK/AB190675
GENBANK/AB190676
GENBANK/AB190677
GENBANK/AB190678
GENBANK/AB190679
GENBANK/AB190680
GENBANK/AB190681
GENBANK/AB190682
GENBANK/AB190683
GENBANK/AB190684
GENBANK/AB190685
GENBANK/AB190686
GENBANK/AB190687
GENBANK/AB190688
GENBANK/AB190689
GENBANK/AB190690
GENBANK/AB190691
GENBANK/AB190692
GENBANK/AB190693
GENBANK/AB190694
GENBANK/AB190695
GENBANK/AB190696
GENBANK/AB190697
GENBANK/AB190698
GENBANK/AB190699
GENBANK/AB190700
GENBANK/AB190701
GENBANK/AB190702
GENBANK/AB190703
GENBANK/AB190704
GENBANK/AB190705
GENBANK/AB190706
GENBANK/AB190707
GENBANK/AB190708
GENBANK/AB190709
GENBANK/AB190710
GENBANK/AB190711
GENBANK/AB190712
GENBANK/AB190713
GENBANK/AB190714
GENBANK/AB190715
GENBANK/AB190716
GENBANK/AB190717
GENBANK/AB190718
GENBANK/AB190719
GENBANK/AB190720
GENBANK/AB190721
GENBANK/AB190722
GENBANK/AB190723
GENBANK/AB190724
GENBANK/AB190725
GENBANK/AB190726
GENBANK/AB190727
GENBANK/AB190728
GENBANK/AB190729
GENBANK/AB190730
GENBANK/AB190731
GENBANK/AB190732
GENBANK/AB190733
GENBANK/AB190734
GENBANK/AB190735
GENBANK/AB190736
GENBANK/AB190737
GENBANK/AB190738
GENBANK/AB190739
GENBANK/AB190740
GENBANK/AB190741
GENBANK/AB190742
GENBANK/AB190743
GENBANK/AB190744
GENBANK/AB190745
GENBANK/AB190746
GENBANK/AB190747
GENBANK/AB190748
GENBANK/AB190749
GENBANK/AB190750
GENBANK/AB190751
GENBANK/AB190752
GENBANK/AB190753
GENBANK/AB190754
GENBANK/AB190755
GENBANK/AB190756
GENBANK/AB190757
GENBANK/AB190758
GENBANK/AB190759
GENBANK/AB190760
GENBANK/AB190761
GENBANK/AB190762
GENBANK/AB190763
GENBANK/AB220897
GENBANK/AB220900
GENBANK/AB220901
GENBANK/AB220902
GENBANK/AB220903
GENBANK/AB220904
GENBANK/AB220908
GENBANK/AB220911
GENBANK/AB220912
GENBANK/AB220913
GENBANK/AB220914
GENBANK/AB239176
GENBANK/AB239177
GENBANK/AB239178
GENBANK/AB239179
GENBANK/AB239180
GENBANK/AB239181
GENBANK/AB239182
GENBANK/AB239183
GENBANK/AB239184
GENBANK/AB239185
GENBANK/AB239186
GENBANK/AB239187
Bacterial Proteins/genetics
Burkholderia/classification/*genetics/*isolation & purification
DNA Gyrase/*genetics
DNA Primers
DNA, Bacterial/*analysis/chemistry/genetics
DNA-Directed RNA Polymerases/*genetics
Molecular Sequence Data
Oryza sativa/microbiology
Phylogeny
Polymerase Chain Reaction
Seeds/microbiology
Sensitivity and Specificity
Sequence Analysis, DNA
Sigma Factor/*genetics
|
| Remarks: |
In order to develop a detection method for the rice pathogens Burkholderia plantarii, Burkholderia glumae and Burkholderia gladioli, the phylogeny of six plant-pathogenic Burkholderia species was analysed using the combined nucleotide sequences of gyrB and rpoD. B. plantarii, B. glumae and B. gladioli formed tight monophyletic branches supported by high bootstrap probabilities. The high sequence similarity revealed a close phylogenetic relationship between B. glumae and B. plantarii. B. plantarii strains were divided into three subclusters comprising rice strains, whereas the single Vanda strain occupied a unique position in the phylogenetic tree. The gyrB and rpoD sequences of all B. glumae strains examined were highly conserved. In contrast, B. gladioli strains demonstrated a far greater sequence diversity, but this diversity did not correlate with pathovar, host plant or geographical origin of the strains. A multiplex-PCR protocol using specific primers from the gyrB sequences was designed that allowed the specific detection and identification of B. plantarii, B. glumae and B. gladioli in rice seeds infected with these pathogenic species. |
| URL: |
16627650 |
|
| Ref #: |
12328 |
| Author(s): |
Viallard,V.;Poirier,I.;Cournoyer,B.;Haurat,J.;Wiebkin,S.;Ophel-Keller,K.;Balandreau,J. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Burkholderia graminis sp. nov., a rhizospheric Burkholderia species, and reassessment of [Pseudomonas] phenazinium, [Pseudomonas] pyrrocinia and [Pseudomonas] glathei as Burkholderia |
| Volume: |
48 Pt 2 |
| Page(s): |
549-63 |
| Year: |
1998 |
| Keyword(s): |
GENBANK/U96927
GENBANK/U96928
GENBANK/U96929
GENBANK/U96930
GENBANK/U96931
GENBANK/U96932
GENBANK/U96933
GENBANK/U96934
GENBANK/U96935
GENBANK/U96936
GENBANK/U96937
GENBANK/U96938
GENBANK/U96939
GENBANK/U96940
GENBANK/U96941
Base Sequence
Burkholderia/*classification/genetics/metabolism
Carbohydrates/metabolism
DNA, Bacterial
Fatty Acids/analysis
Molecular Sequence Data
Nucleic Acid Hybridization
Phenotype
Phylogeny
Pseudomonas/*classification
Support, Non-U.S. Gov't
Triticum/microbiology
Zea mays/microbiology
|
| Remarks: |
In a survey of soil and wheat or maize rhizoplane bacteria isolated using a medium containing azelaic acid and tryptamine as sole carbon and nitrogen sources, respectively, a large proportion of Burkholderia-like bacteria were found. Among them, a homogeneous group of strains was identifiable based on phenotypic properties, fatty acid composition, DNA-DNA hybridizations and 16S rDNA sequences. According to molecular data, this group belongs to the genus Burkholderia but its weak similarity to previously described species suggests that it belongs to a novel species. Closest 16S rDNA phylogenetic neighbours of this species are Burkholderia caryophylli and two previously named Pseudomonas species which clearly appear to be part of the Burkholderia genus and were thus named Burkholderia glathei comb. nov. and Burkholderia phenazinium comb. nov. Strains of the new species are oxidase- and catalase-positive, produce indole and gelatinase, and use L-xylose, lactose, rhamnose, trehalose, D-lyxose, L-arabitol, xylitol and D-raffinose as sole carbon source. This novel taxon is named Burkholderia graminis. In the course of this study, [Pseudomonas] pyrrocinia also proved to be a member of the Burkholderia genus. |
| URL: |
98401484 |
|
| Ref #: |
12332 |
| Author(s): |
LiPuma,J.J.;Dulaney,B.J.;McMenamin,J.D.;Whitby,P.W.;Stull,T.L.;Coenye,T.;Vandamme,P. |
| Journal: |
J Clin Microbiol |
| Title: |
Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients |
| Volume: |
37 |
| Page(s): |
3167-70 |
| Year: |
1999 |
| Keyword(s): |
GENBANK/AF097530
GENBANK/AF097531
GENBANK/AF097532
GENBANK/AF097533
GENBANK/AF097534
Base Sequence
Burkholderia cepacia/classification/*isolation & purification
Cystic Fibrosis/*microbiology
Human
Molecular Sequence Data
Polymerase Chain Reaction/*methods
RNA, Ribosomal, 16S/*genetics
RNA, Ribosomal, 23S/*genetics
Sensitivity and Specificity
Support, Non-U.S. Gov't
|
| Remarks: |
PCR assays targeting rRNA genes were developed to identify species (genomovars) within the Burkholderia cepacia complex. Each assay was tested with 177 bacterial isolates that also underwent taxonomic analysis by whole-cell protein profile. These isolates were from clinical and environmental sources and included 107 B. cepacia complex strains, 23 Burkholderia gladioli strains, 20 Ralstonia pickettii strains, 10 Pseudomonas aeruginosa strains, 8 Stenotrophomonas maltophilia strains, and 9 isolates belonging to nine other species. The sensitivity and specificity of the 16S rRNA-based assay for Burkholderia multivorans (genomovar II) were 100 and 99%, respectively; for Burkholderia vietnamiensis (genomovar V), sensitivity and specificity were 87 and 92%, respectively. An assay based on 16S and 23S rRNA gene analysis of B. cepacia ATCC 25416 (genomovar I) was useful in identifying genomovars I, III, and IV as a group (sensitivity, 100%, and specificity, 99%). Another assay, designed to be specific at the genus level, identified all but one of the Burkholderia and Ralstonia isolates tested (sensitivity, 99%, and specificity, 96%). The combined use of these assays offers a significant improvement over previously published PCR assays for B. cepacia. |
| URL: |
99419133 |
|
| Ref #: |
1786 |
| Author(s): |
Palleroni,N.J.;Holmes,B. |
| Journal: |
Int. J. Syst. Bacteriol. |
| Title: |
Pseudomonas cepacia sp. nov., nom. rev. |
| Volume: |
31 |
| Page(s): |
479-481 |
| Year: |
1981 |
|
| Ref #: |
4854 |
| Author(s): |
Palleroni,N.J.;Kunisawa,R.;Contopoulou,R.;Doudoroff,M. |
| Journal: |
Int. J. Syst. Bacteriol. |
| Title: |
Nucleic acid homologies in the genus Pseudomonas. |
| Volume: |
23 |
| Page(s): |
333-339 |
| Year: |
1973 |
|
| Ref #: |
4855 |
| Author(s): |
Meyer,J.-M.;Hohnadel,D.;Hallé,F. |
| Journal: |
J. Gen. Microbiol. |
| Title: |
Cepabactin from Pseudomonas cepacia, a new type of siderophore. |
| Volume: |
135 |
| Page(s): |
1479-1487 |
| Year: |
1989 |
|
| Ref #: |
4899 |
| Author(s): |
Dewhirst,F.E.;Paster,B.J.;Bright,P.L. |
| Journal: |
Int. J. Syst. Bacteriol. |
| Title: |
Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella, and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S ribosomal ribonucleic acid sequence comparison: transfer of Eikenella and Simonsiella to the family Nei |
| Volume: |
39 |
| Page(s): |
258-266 |
| Year: |
1989 |
|
| Ref #: |
5966 |
| Author(s): |
Gillis,M.;Van,T.V.;Bardin,R.;Goor,M.;Hebbar,P.;Willems,A.;Segers,P.;Kersters,K.;Heulin,T.;Fernandez,M.P. |
| Journal: |
Int. J. Syst. Bacteriol. |
| Title: |
Polyphasic taxonomy in the genus Burkholderia leading to an emended description of the genus and proposition of Burkholderia vietnamiensis sp. nov. for N2-fixing isolates from rice in Vietnam. |
| Volume: |
45 |
| Page(s): |
274-289 |
| Year: |
1995 |
|
|
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