Bacteria and Mycoplasmas detail

Conditions of Supply of Microbial Pathogens: Safety

Bacteria Collection: Providencia alcalifaciens

NCTC Number:

NCTC 10286

Current Name:

Providencia alcalifaciens

Original Strain Reference:

10286

Other Collection No:

ATCC 9886; PROVIDENCE O19:H2

Previous Catalogue Name:

Providencia alcalifaciens

Other Names:

PROVIDENCIA ALCALIGENES;PROVIDENCIA SP SUBGROUP A;EBERTHELLA

Type Strain:

Yes

Family:

Enterobacteriaceae

Hazard Group (ACDP):

Release Restrictions:

Terms & Conditions of Supply of Microbial Pathogens: Safety

Conditions for growth on solid media:

Nutrient agar, 24 hours, 37°C, aerobic

Conditions for growth on liquid media:

nutrient broth,37, facultative anaerobe

Isolated From:

faeces

Whole Genome Sequence:

http://www.ebi.ac.uk/ena/data/view/ERS513140

Annotated Genome:

ftp://ftp.sanger.ac.uk/pub/project/pathogens/NCTC3000/d...

16S rRNA Gene Sequence:

Miscellaneous Sequence Data:

Bibliography:

REVISTA DE INSTITUTO ADOLFO LUTZ 1944 4 182;EWING W H 1962 INT BULL BACT

Extended Bibliography:

Show bibliography

Ref #:	48709
Author(s):	Dauga,C.
Journal:	Int J Syst Evol Microbiol
Title:	Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies
Volume:	52
Page(s):	531-47
Year:	2002
Keyword(s):	GENBANK/AJ300528 GENBANK/AJ300529 GENBANK/AJ300530 GENBANK/AJ300531 GENBANK/AJ300532 GENBANK/AJ300533 GENBANK/AJ300534 GENBANK/AJ300535 GENBANK/AJ300536 GENBANK/AJ300537 GENBANK/AJ300538 GENBANK/AJ300539 GENBANK/AJ300540 GENBANK/AJ300541 GENBANK/AJ300542 GENBANK/AJ300543 GENBANK/AJ300544 GENBANK/AJ300545 GENBANK/AJ300546 GENBANK/AJ300547 GENBANK/AJ300548 GENBANK/AJ300549 GENBANK/AJ300550 GENBANK/AJ300551 GENBANK/AJ300552 GENBANK/AJ300553 GENBANK/AJ300554 DNA Gyrase/genetics Enterobacteriaceae/classification/genetics Evolution, Molecular Genes, rRNA Molecular Sequence Data Phenotype RNA, Bacterial/chemistry RNA, Ribosomal, 16S/chemistry
Remarks:	Phylogenetic trees showing the evolutionary relatedness of Enterobacteriaceae based upon gyrB and 16S rRNA genes were compared. Congruence among trees of these molecules indicates that the genomes of these species are not completely mosaic and that molecular systematic studies can be carried out. Phylogenetic trees based on gyrB sequences appeared to be more reliable at determining relationships among Serratia species than trees based on 16S rRNA gene sequences. gyrB sequences from Serratia species formed a monophyletic group validated by significant bootstrap values. Serratia fonticola had the most deeply branching gyrB sequence in the Serratia monophyletic group, which was consistent with its atypical phenotypic characteristics. Klebsiella and Enterobacter genera seemed to be polyphyletic, but the branching patterns of gyrB and 16S rRNA gene trees were not congruent. Enterobacter aerogenes was grouped with Klebsiella pneumoniae on the gyrB phylogenetic tree, which supports that this species could be transferred to the Klebsiella genus. Unfortunately, 16S rRNA and gyrB phylogenetic trees gave conflicting evolutionary relationships for Citrobacter freundii because of its unusual gyrB evolutionary process. gyrB lateral gene transfer was suspected for Hafnia alvei. Saturation of gyrB genes was observed by the pairwise comparison of Proteus spp., Providencia alcalifaciens and Morganella morganii sequences. Depending on their level of variability, 16S rRNA gene sequences were useful for describing phylogenetic relationships between distantly related Enterobacteriaceae, whereas gyrB sequence comparison was useful for inferring intra- and some intergeneric relationships.
URL:	11931166

Ref #:	13697
Author(s):	Dauga,C.
Journal:	Int J Syst Evol Microbiol
Title:	Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies
Volume:	52
Page(s):	531-47
Year:	2002
Keyword(s):	GENBANK/AJ300528 GENBANK/AJ300529 GENBANK/AJ300530 GENBANK/AJ300531 GENBANK/AJ300532 GENBANK/AJ300533 GENBANK/AJ300534 GENBANK/AJ300535 GENBANK/AJ300536 GENBANK/AJ300537 GENBANK/AJ300538 GENBANK/AJ300539 GENBANK/AJ300540 GENBANK/AJ300541 GENBANK/AJ300542 GENBANK/AJ300543 GENBANK/AJ300544 GENBANK/AJ300545 GENBANK/AJ300546 GENBANK/AJ300547 GENBANK/AJ300548 GENBANK/AJ300549 GENBANK/AJ300550 GENBANK/AJ300551 GENBANK/AJ300552 GENBANK/AJ300553 GENBANK/AJ300554 Comparative Study DNA Gyrase/genetics Enterobacteriaceae/classification/genetics Evolution, Molecular Genes, rRNA Molecular Sequence Data Phenotype RNA, Bacterial/chemistry RNA, Ribosomal, 16S/chemistry
Remarks:	Phylogenetic trees showing the evolutionary relatedness of Enterobacteriaceae based upon gyrB and 16S rRNA genes were compared. Congruence among trees of these molecules indicates that the genomes of these species are not completely mosaic and that molecular systematic studies can be carried out. Phylogenetic trees based on gyrB sequences appeared to be more reliable at determining relationships among Serratia species than trees based on 16S rRNA gene sequences. gyrB sequences from Serratia species formed a monophyletic group validated by significant bootstrap values. Serratia fonticola had the most deeply branching gyrB sequence in the Serratia monophyletic group, which was consistent with its atypical phenotypic characteristics. Klebsiella and Enterobacter genera seemed to be polyphyletic, but the branching patterns of gyrB and 16S rRNA gene trees were not congruent. Enterobacter aerogenes was grouped with Klebsiella pneumoniae on the gyrB phylogenetic tree, which supports that this species could be transferred to the Klebsiella genus. Unfortunately, 16S rRNA and gyrB phylogenetic trees gave conflicting evolutionary relationships for Citrobacter freundii because of its unusual gyrB evolutionary process. gyrB lateral gene transfer was suspected for Hafnia alvei. Saturation of gyrB genes was observed by the pairwise comparison of Proteus spp., Providencia alcalifaciens and Morganella morganii sequences. Depending on their level of variability, 16S rRNA gene sequences were useful for describing phylogenetic relationships between distantly related Enterobacteriaceae, whereas gyrB sequence comparison was useful for inferring intra- and some intergeneric relationships.
URL:	21928128

Data:

(ATCC 9886, DSM 30120) Type strain / ATCC in 1962 / R. E. Buchanan, Iowa in 1945 / L. de Salles Gomez, Brazil / Faeces / 019:H2 / Ewing, W. H. (1962) Int. Bull. bact. Nomencl.Taxon. 12, 93

Accession Date:

01/01/1962

History:

FROM BUCHANAN IOWA 1945 FROM LUIS DE SALLES GOMES

Authority:

(de Salles Gomes 1944) Ewing 1962 (AL)

Depositor:

ATCC

Taxonomy:

TaxLink: S2390 (Providencia alcalifaciens (de Salles Gomes 1944) Ewing 1962) - Date of change: 5/02/2003

Biosafety Responsibility:

It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country

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Note:

The Culture Collections hold cell cultures, bacteria, fungi and virus strains from worldwide sources. Our scientists ensure that the identification of the cultures is correct and they remain unchanged from when they are first deposited with the Collection. Nevertheless, some of the data we provide about the cultures is supplied by the person depositing the strains and, although we have multiple checking procedures in place, we cannot always verify all their data. Please note that the Culture Collections cannot be held responsible for any inaccuracies in the data provided by the depositors.

Cultures supplied by Culture Collections are to be used as controls for microbiology testing and for research purposes only. Please view the Terms & Conditions of Supply for more information.