NCTC Number: |
NCTC 10286
|
Current Name: |
Providencia alcalifaciens
|
Original Strain Reference: |
10286
|
Other Collection No: |
ATCC 9886; PROVIDENCE O19:H2
|
Previous Catalogue Name: |
Providencia alcalifaciens
|
Other Names: |
PROVIDENCIA ALCALIGENES;PROVIDENCIA SP SUBGROUP A;EBERTHELLA
|
Type Strain: |
Yes
|
Family: |
Enterobacteriaceae
|
Hazard Group (ACDP): |
2
|
Release Restrictions: |
Terms & Conditions of Supply of Microbial Pathogens: Safety
|
Conditions for growth on solid media: |
Nutrient agar, 24 hours, 37°C, aerobic
|
Conditions for growth on liquid media: |
nutrient broth,37, facultative anaerobe
|
Isolated From: |
faeces
|
Whole Genome Sequence: |
http://www.ebi.ac.uk/ena/data/view/ERS513140
|
Annotated Genome: |
ftp://ftp.sanger.ac.uk/pub/project/pathogens/NCTC3000/d...
|
16S rRNA Gene Sequence: |
>gb|AJ301684|CIP8290T (ATCC9886T)|Providencia alcalifaciens 16S rRNA gene, strain CIP8290T.| aactgtggttgatca... >gb|DQ885261|NCTC 10286|Providencia alcalifaciens strain NCTC 10286 16S ribosomal RNA gene,partial sequence.| gctcagattgaacgc...
|
Miscellaneous Sequence Data: |
>gb|AJ300547|CIP 82.92T| ATCC 9886T|Providencia alcalifaciens partial gyrB gene for DNA gyrase Bsubunit strain CIP 82.92T, ATCC 9886T.| ataaattcgatgaca...
|
Bibliography: |
REVISTA DE INSTITUTO ADOLFO LUTZ 1944 4 182;EWING W H 1962 INT BULL BACT
|
Extended Bibliography: |
Show bibliography
Ref #: |
48709 |
Author(s): |
Dauga,C. |
Journal: |
Int J Syst Evol Microbiol |
Title: |
Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies |
Volume: |
52 |
Page(s): |
531-47 |
Year: |
2002 |
Keyword(s): |
GENBANK/AJ300528
GENBANK/AJ300529
GENBANK/AJ300530
GENBANK/AJ300531
GENBANK/AJ300532
GENBANK/AJ300533
GENBANK/AJ300534
GENBANK/AJ300535
GENBANK/AJ300536
GENBANK/AJ300537
GENBANK/AJ300538
GENBANK/AJ300539
GENBANK/AJ300540
GENBANK/AJ300541
GENBANK/AJ300542
GENBANK/AJ300543
GENBANK/AJ300544
GENBANK/AJ300545
GENBANK/AJ300546
GENBANK/AJ300547
GENBANK/AJ300548
GENBANK/AJ300549
GENBANK/AJ300550
GENBANK/AJ300551
GENBANK/AJ300552
GENBANK/AJ300553
GENBANK/AJ300554
DNA Gyrase/*genetics
Enterobacteriaceae/*classification/genetics
Evolution, Molecular
Genes, rRNA
Molecular Sequence Data
Phenotype
RNA, Bacterial/chemistry
RNA, Ribosomal, 16S/chemistry
|
Remarks: |
Phylogenetic trees showing the evolutionary relatedness of Enterobacteriaceae based upon gyrB and 16S rRNA genes were compared. Congruence among trees of these molecules indicates that the genomes of these species are not completely mosaic and that molecular systematic studies can be carried out. Phylogenetic trees based on gyrB sequences appeared to be more reliable at determining relationships among Serratia species than trees based on 16S rRNA gene sequences. gyrB sequences from Serratia species formed a monophyletic group validated by significant bootstrap values. Serratia fonticola had the most deeply branching gyrB sequence in the Serratia monophyletic group, which was consistent with its atypical phenotypic characteristics. Klebsiella and Enterobacter genera seemed to be polyphyletic, but the branching patterns of gyrB and 16S rRNA gene trees were not congruent. Enterobacter aerogenes was grouped with Klebsiella pneumoniae on the gyrB phylogenetic tree, which supports that this species could be transferred to the Klebsiella genus. Unfortunately, 16S rRNA and gyrB phylogenetic trees gave conflicting evolutionary relationships for Citrobacter freundii because of its unusual gyrB evolutionary process. gyrB lateral gene transfer was suspected for Hafnia alvei. Saturation of gyrB genes was observed by the pairwise comparison of Proteus spp., Providencia alcalifaciens and Morganella morganii sequences. Depending on their level of variability, 16S rRNA gene sequences were useful for describing phylogenetic relationships between distantly related Enterobacteriaceae, whereas gyrB sequence comparison was useful for inferring intra- and some intergeneric relationships. |
URL: |
11931166 |
|
Ref #: |
13697 |
Author(s): |
Dauga,C. |
Journal: |
Int J Syst Evol Microbiol |
Title: |
Evolution of the gyrB gene and the molecular phylogeny of Enterobacteriaceae: a model molecule for molecular systematic studies |
Volume: |
52 |
Page(s): |
531-47 |
Year: |
2002 |
Keyword(s): |
GENBANK/AJ300528
GENBANK/AJ300529
GENBANK/AJ300530
GENBANK/AJ300531
GENBANK/AJ300532
GENBANK/AJ300533
GENBANK/AJ300534
GENBANK/AJ300535
GENBANK/AJ300536
GENBANK/AJ300537
GENBANK/AJ300538
GENBANK/AJ300539
GENBANK/AJ300540
GENBANK/AJ300541
GENBANK/AJ300542
GENBANK/AJ300543
GENBANK/AJ300544
GENBANK/AJ300545
GENBANK/AJ300546
GENBANK/AJ300547
GENBANK/AJ300548
GENBANK/AJ300549
GENBANK/AJ300550
GENBANK/AJ300551
GENBANK/AJ300552
GENBANK/AJ300553
GENBANK/AJ300554
Comparative Study
DNA Gyrase/*genetics
Enterobacteriaceae/*classification/genetics
Evolution, Molecular
Genes, rRNA
Molecular Sequence Data
Phenotype
RNA, Bacterial/chemistry
RNA, Ribosomal, 16S/chemistry
|
Remarks: |
Phylogenetic trees showing the evolutionary relatedness of Enterobacteriaceae based upon gyrB and 16S rRNA genes were compared. Congruence among trees of these molecules indicates that the genomes of these species are not completely mosaic and that molecular systematic studies can be carried out. Phylogenetic trees based on gyrB sequences appeared to be more reliable at determining relationships among Serratia species than trees based on 16S rRNA gene sequences. gyrB sequences from Serratia species formed a monophyletic group validated by significant bootstrap values. Serratia fonticola had the most deeply branching gyrB sequence in the Serratia monophyletic group, which was consistent with its atypical phenotypic characteristics. Klebsiella and Enterobacter genera seemed to be polyphyletic, but the branching patterns of gyrB and 16S rRNA gene trees were not congruent. Enterobacter aerogenes was grouped with Klebsiella pneumoniae on the gyrB phylogenetic tree, which supports that this species could be transferred to the Klebsiella genus. Unfortunately, 16S rRNA and gyrB phylogenetic trees gave conflicting evolutionary relationships for Citrobacter freundii because of its unusual gyrB evolutionary process. gyrB lateral gene transfer was suspected for Hafnia alvei. Saturation of gyrB genes was observed by the pairwise comparison of Proteus spp., Providencia alcalifaciens and Morganella morganii sequences. Depending on their level of variability, 16S rRNA gene sequences were useful for describing phylogenetic relationships between distantly related Enterobacteriaceae, whereas gyrB sequence comparison was useful for inferring intra- and some intergeneric relationships. |
URL: |
21928128 |
|
|
Data: |
(ATCC 9886, DSM 30120) Type strain / ATCC in 1962 / R. E. Buchanan, Iowa in 1945 / L. de Salles Gomez, Brazil / Faeces / 019:H2 / Ewing, W. H. (1962) Int. Bull. bact. Nomencl.Taxon. 12, 93
|
Accession Date: |
01/01/1962
|
History: |
FROM BUCHANAN IOWA 1945 FROM LUIS DE SALLES GOMES
|
Authority: |
(de Salles Gomes 1944) Ewing 1962 (AL)
|
Depositor: |
ATCC
|
Taxonomy: |
TaxLink: S2390 (Providencia alcalifaciens (de Salles Gomes 1944) Ewing 1962) - Date of change: 5/02/2003
|
Biosafety Responsibility: |
It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country
|
The Culture Collections hold cell cultures, bacteria, fungi and virus strains from worldwide sources. Our scientists ensure that the identification of the cultures is correct and they remain unchanged from when they are first deposited with the Collection. Nevertheless, some of the data we provide about the cultures is supplied by the person depositing the strains and, although we have multiple checking procedures in place, we cannot always verify all their data. Please note that the Culture Collections cannot be held responsible for any inaccuracies in the data provided by the depositors.
Cultures supplied by Culture Collections are to be used as controls for microbiology testing and for research purposes only. Please view the Terms & Conditions of Supply for more information.