NCTC Number: |
NCTC 10275
|
Current Name: |
Yersinia pseudotuberculosis
|
Original Strain Reference: |
14/1
|
Other Collection No: |
ATCC 29833; CIP 55.85; DSM 8992
|
Previous Catalogue Name: |
Yersinia pseudotuberculosis
|
Type Strain: |
Yes
|
Family: |
Enterobacteriaceae
|
Hazard Group (ACDP): |
2
|
Release Restrictions: |
Terms & Conditions of Supply of Microbial Pathogens: Safety
|
Conditions for growth on solid media: |
Nutrient agar, 24-48 hours, 37°C, aerobic
|
Conditions for growth on liquid media: |
nutrient broth,37, facultative anaerobe
|
Isolated From: |
bird;from a turkey
|
Whole Genome Sequence: |
http://www.ebi.ac.uk/ena/data/view/ERS1353907
|
16S rRNA Gene Sequence: |
>gb|AF366375|ATCC 29833|Yersinia pseudotuberculosis 16S ribosomal RNA gene, partialsequence.| attgaacgctggcgg...
|
Miscellaneous Sequence Data: |
>gb|AY370874|ATCC 29833|Yersinia pseudotuberculosis strain ATCC 29833 gyrase B (gyrB) gene,partial cds.| aaagtttccggcggt...
|
Extended Bibliography: |
Show bibliography
Ref #: |
95482 |
Author(s): |
Kim,W.;Song,M.O.;Song,W.;Kim,K.J.;Chung,S.I.;Choi,C.S.;Park,Y.H. |
Journal: |
Antonie Van Leeuwenhoek |
Title: |
Comparison of 16S rDNA analysis and rep-PCR genomic fingerprinting for molecular identification of Yersinia pseudotuberculosis |
Volume: |
83 |
Page(s): |
125-33 |
Year: |
2003 |
Keyword(s): |
GENBANK/AF365934
GENBANK/AF365935
GENBANK/AF365936
GENBANK/AF365937
GENBANK/AF365938
GENBANK/AF365939
GENBANK/AF365940
GENBANK/AF365941
GENBANK/AF365942
GENBANK/AF365943
GENBANK/AF365944
GENBANK/AF365945
GENBANK/AF365946
GENBANK/AF365947
GENBANK/AF365948
GENBANK/AF365949
GENBANK/AF365950
GENBANK/AF366375
GENBANK/AF366376
GENBANK/AF366377
GENBANK/AF366378
GENBANK/AF366379
GENBANK/AF366380
GENBANK/AF366381
GENBANK/AF366382
GENBANK/AF366383
GENBANK/AF366384
GENBANK/AF366385
DNA Fingerprinting/*methods
DNA, Bacterial/analysis
DNA, Ribosomal/analysis
Genome, Bacterial
Humans
Molecular Sequence Data
Phylogeny
Polymerase Chain Reaction/*methods
RNA, Ribosomal, 16S/*genetics
*Sequence Analysis, DNA
Yersinia pestis/classification/genetics
Yersinia pseudotuberculosis/*classification/genetics
|
Remarks: |
16S rDNA sequence analysis and repetitive element sequence-based PCR (rep-PCR) genomic fingerprinting were evaluated on 11 type strains of the genus Yersinia and 17 recognized serotype strains of Y. pseudotuberculosis to investigate their genetic relatedness and to establish the value of techniques for the identification of Y. pseudotuberculosis. A phylogenetic tree constructed from 16S rDNA sequences showed that the type strains of Yersinia species formed distinct clusters with the exception of Y. pestis and Y. pseudotuberculosis. Moreover, Y. pestis NCTC 5923T was found to be closely related to Y. pseudotuberculosis serotypes 1b, 3, and 7. Dendrograms generated from REP-PCR, and ERIC-PCR data revealed that members of the genus Yersinia differed from each other with the degree of similarity 62% and 58%, respectively. However, the BOX-PCR results showed that Y. pestis 5923T clustered with the Y. pseudotuberculosis group with a degree of similarity 74%. According to these findings, 16S rDNA sequence analysis was unable to reliably discriminate Y. pseudotuberculosis from Y. pestis. However, REP-PCR and especially ERIC-PCR provided an effective means of differentiating between members of the taxa. |
URL: |
12785306 |
|
Ref #: |
43181 |
Author(s): |
Delmas,J.;Breysse,F.;Devulder,G.;Flandrois,J.P.;Chomarat,M. |
Journal: |
Diagn Microbiol Infect Dis |
Title: |
Rapid identification of Enterobacteriaceae by sequencing DNA gyrase subunit B encoding gene |
Volume: |
55 |
Page(s): |
263-8 |
Year: |
2006 |
Keyword(s): |
Bacterial Typing Techniques/*methods
DNA Gyrase/*genetics
Enterobacteriaceae/enzymology/genetics/*isolation & purification
Genotype
Humans
Sequence Analysis, DNA/methods
|
Remarks: |
Real-time polymerase chain reaction and sequencing were used to characterize a 506-bp-long DNA fragment internal to the gyrB gene (gyrBint). The sequences obtained from 32 Enterobacteriaceae-type strains and those available in the Genbank nucleotide sequence database (n = 24) were used as a database to identify 240 clinical enterobacteria isolates. Sequence analysis of the gyrBint fragment of 240 strains showed that gyrBint constitutes a discriminative target sequence to differentiate between Enterobacteriaceae species. Comparison of these identifications with those obtained by phenotypic methods (Vitek 1 system and/or Rapid ID 32E; bioMerieux, Marcy l'Etoile, France) revealed discrepancies essentially with genera Citrobacter and Enterobacter. Most of the strains identified as Enterobacter cloacae by phenotypic methods were identified as Enterobacter hormaechei strains by gyrBint sequencing. The direct sequencing of gyrBint would be useful as a complementary tool in the identification of clinical Enterobacteriaceae isolates. |
URL: |
16626902 |
|
Ref #: |
1300 |
Author(s): |
Skerman,V.B.D.;McGowan,V.;Sneath,P.H.A.(ed) |
Journal: |
Int. J. Syst. Bacteriol. |
Title: |
Approved Lists of Bacterial Names. |
Volume: |
30 |
Page(s): |
225-420 |
Year: |
1980 |
|
Ref #: |
5069 |
Author(s): |
Bercovier,H.;Mollaret,H.H. |
Title: |
Genus XIV. Yersinia. |
Page(s): |
498-506 |
|
Ref #: |
7653 |
Author(s): |
Smith,J.E.;Thal,E. |
Journal: |
Acta Pathol. Microbiol. Scand. |
Title: |
A taxonomic study of the genus Pasteurella using a numerical technique. |
Volume: |
64 |
Page(s): |
213-223 |
Year: |
1965 |
|
|
Data: |
(ATCC 29833) Type strain / E. Thal, Stockholm in 1962 / Turkey in 1952 / Thal group 1
|
Accession Date: |
01/01/1962
|
History: |
IDOLATED IN 1952
|
Authority: |
(Pfeiffer 1889) Smith and Thal 1965 (AL)
|
Depositor: |
THAL E
|
Taxonomy: |
TaxLink: S3618 (Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965) - Date of change: 5/02/2003
|
Biosafety Responsibility: |
It is the responsibility of the customer to ensure that their facilities comply with biosafety regulations for their own country
|
The Culture Collections hold cell cultures, bacteria, fungi and virus strains from worldwide sources. Our scientists ensure that the identification of the cultures is correct and they remain unchanged from when they are first deposited with the Collection. Nevertheless, some of the data we provide about the cultures is supplied by the person depositing the strains and, although we have multiple checking procedures in place, we cannot always verify all their data. Please note that the Culture Collections cannot be held responsible for any inaccuracies in the data provided by the depositors.
Cultures supplied by Culture Collections are to be used as controls for microbiology testing and for research purposes only. Please view the Terms & Conditions of Supply for more information.