| Extended Bibliography: |
Show bibliography
| Ref #: |
55069 |
| Author(s): |
Sallen,B.;Rajoharison,A.;Desvarenne,S.;Quinn,F.;Mabilat,C. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Comparative analysis of 16S and 23S rRNA sequences of Listeria species |
| Volume: |
46 |
| Page(s): |
669-74 |
| Year: |
1996 |
| Keyword(s): |
GENBANK/X92948
GENBANK/X92949
GENBANK/X92950
GENBANK/X92951
GENBANK/X92952
GENBANK/X92953
GENBANK/X92954
Base Sequence
DNA Primers
DNA, Bacterial
DNA, Ribosomal
Listeria/classification/*genetics
Molecular Sequence Data
Phylogeny
*RNA, Bacterial
*RNA, Ribosomal, 16S
*RNA, Ribosomal, 23S
Sequence Homology, Nucleic Acid
|
| Remarks: |
In order to establish the taxonomic value of 16S rRNA and 23S rRNA for distinguishing Listeria species, the complete 23S rRNA sequences for all Listeria species were determined by using the type strains. We designed and experimentally validated a universal 23S rRNA sequencing method, which included PCR amplification of the rDNA gene and direct cycle sequencing of the amplicon with eubacterial primers. The results of our sequence comparison indicated that the genus Listeria can be divided into two subgroups; one subgroup is composed of Listeria monocytogenes, Listeria innocua, Listeria ivanovii, Listeria seeligeri, and Listeria welshimeri, whereas the other subgroup includes Listeria grayi subsp. grayi and Listeria grayi subsp. murrayi. A phylogenetic analysis revealed that these species diverged recently. These results are consistent with 16S rRNA sequence analysis data. For application purposes, one 16S rRNA region that can be sued to distinguish each Listeria species except L. Monocytogenes and L. innocua has been described. In this study we found four 23S rRNA signature regions which, when used in combination, can be used to distinguish the species. |
| URL: |
8782674 |
|
| Ref #: |
55062 |
| Author(s): |
Vaneechoutte,M.;Boerlin,P.;Tichy,H.V.;Bannerman,E.;Jager,B.;Bille,J. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Comparison of PCR-based DNA fingerprinting techniques for the identification of Listeria species and their use for atypical Listeria isolates |
| Volume: |
48 Pt 1 |
| Page(s): |
127-39 |
| Year: |
1998 |
| Keyword(s): |
GENBANK/X98526
GENBANK/X98527
GENBANK/X98528
GENBANK/X98529
GENBANK/X98530
GENBANK/X98531
GENBANK/X98532
DNA Fingerprinting/*methods
DNA, Bacterial/analysis
Genes, Bacterial/genetics
Listeria monocytogenes/*classification/*genetics/isolation & purification
Molecular Sequence Data
Phylogeny
Polymerase Chain Reaction/methods
Polymorphism, Restriction Fragment Length
Polymorphism, Single-Stranded Conformational
RNA, Bacterial/analysis
RNA, Ribosomal, 16S/analysis
RNA, Transfer/analysis
|
| Remarks: |
Four PCR-based DNA fingerprinting techniques were compared for their ability to identify at the species level a heterogeneous collection of isolates belonging to the six valid Listeria species. 16S rDNA-RFLP analysis identified all species and 16S rDNA-SSCP analysis identified almost all species. Also, isolates with unusual biochemical characteristics and/or unusual antigenic composition could be identified correctly. rRNA-intracistronic length polymorphism analysis suffered from high intraspecific variability, a limited number of fragments per profile, and small length differences between the spacers of different species. tRNA-intergenic length polymorphism analysis resulted in identification of all isolates but one, when fluorescent DNA capillary electrophoresis was used such that fragment length differences of 1 bp could be resolved. The four techniques yielded comparable results relevant to the taxonomy of Listeria. They all indicate a high degree of genetic relatedness between L. innocua and L. welshimeri, homogeneity of L. grayi, distinct but clear relatedness of L. grayi to the other Listeria species, a clear distinction between the two subspecies of L. ivanovii, and a clear distinction between Listeria isolates and isolates from closely related taxa or from species which are phenotypically difficult to distinguish from Listeria. New sequence determination of the 16S rRNA gene was necessary to obtain sequences in accordance with the findings of 16S rDNA-RFLP analysis. |
| URL: |
9542083 |
|
| Ref #: |
55063 |
| Author(s): |
Graham,T.A.;Golsteyn-Thomas,E.J.;Thomas,J.E.;Gannon,V.P. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Inter- and intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp |
| Volume: |
47 |
| Page(s): |
863-9 |
| Year: |
1997 |
| Keyword(s): |
GENBANK/U44061
GENBANK/U44062
GENBANK/U57912
GENBANK/U57913
GENBANK/U57914
GENBANK/U57915
GENBANK/U57916
GENBANK/U57917
GENBANK/U57918
GENBANK/U78980
GENBANK/U78981
GENBANK/U78982
GENBANK/U78983
GENBANK/U78984
Animals
DNA, Bacterial/analysis
Humans
Listeria/*classification/*genetics
Molecular Sequence Data
Operon/genetics
RNA, Ribosomal, 16S/*analysis
RNA, Ribosomal, 23S/*analysis
Sequence Homology, Nucleic Acid
Species Specificity
|
| Remarks: |
The 16S-23S rRNA intergenic spacer (IGS) regions found in six Listeria species were characterized. PCR amplification of the 16S-23S IGS with a "generic primer" set generated products of about 340 bp (small) and 550 to 590 bp (large) with DNA from all Listeria strains tested. Seven Listeria monocytogenes serotype 4b strains and one L. monocytogenes serotype 4d strain also had an additional PCR product of ca. 360 bp. The 360-bp PCR product from one of these L. monocytogenes serotype 4b strains was identical in nucleotide sequence to the small 340-bp IGS, except that it contained an 18-bp tandem repeat. The small rRNA IGSs of L. innocua, L. ivanovii, L. seeligeri, L. welshimeri, and L. grayi were 83 to 99% homologous to that of L. monocytogenes. The large rRNA IGS of L. monocytogenes was 81 to 96% homologous to those of the other Listeria species and agreed with current taxonomic division among these species. The nucleotide sequences of the central 274 bp of the large rRNA IGS of strains from seven different L. monocytogenes serotypes were highly homologous; however, serotype-specific differences were noted, and four groups were identified within L. monocytogenes based on this analysis. |
| URL: |
9226919 |
|
| Ref #: |
55089 |
| Author(s): |
Collins,M.D.;Wallbanks,S.;Lane,D.J.;Shah,J.;Nietupski,R.;Smida,J.;Dorsch,M.;Stackebrandt,E. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA |
| Volume: |
41 |
| Page(s): |
240-6 |
| Year: |
1991 |
| Keyword(s): |
GENBANK/X54447
GENBANK/X56148
GENBANK/X56149
GENBANK/X56150
GENBANK/X56151
GENBANK/X56152
GENBANK/X56153
GENBANK/X56154
GENBANK/X56155
GENBANK/X56156
Base Sequence
Lactobacillaceae/classification/genetics
Listeria/*classification/genetics
Listeria monocytogenes/classification/genetics
Molecular Sequence Data
*Phylogeny
RNA, Bacterial/chemistry/metabolism
RNA, Ribosomal, 16S/*chemistry/metabolism
RNA-Directed DNA Polymerase/*metabolism
|
| Remarks: |
The phylogenetic interrelationships of members of the genus Listeria were investigated by using reverse transcriptase sequencing of 16S rRNA. The sequence data indicate that at the intrageneric level the genus Listeria consists of the following two closely related but distinct lines of descent: (i) the Listeria monocytogenes group of species (including Listeria innocua, Listeria ivanovii, Listeria seeligeri, and Listeria welshimeri) and (ii) the species Listeria grayi and Listeria murrayi. At the intergeneric level a specific phylogenetic relationship between the genera Listeria and Brochothrix was evident. The sequence data clearly demonstrated that the genus Listeria is phylogenetically remote from the genus Lactobacillus and should not be included in an extended family Lactobacillaceae. |
| URL: |
1713054 |
|
| Ref #: |
12314 |
| Author(s): |
Collins,M.D.;Wallbanks,S.;Lane,D.J.;Shah,J.;Nietupski,R.;Smida,J.;Dorsch,M.;Stackebrandt,E. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA |
| Volume: |
41 |
| Page(s): |
240-6 |
| Year: |
1991 |
| Keyword(s): |
GENBANK/X54447
GENBANK/X56148
GENBANK/X56149
GENBANK/X56150
GENBANK/X56151
GENBANK/X56152
GENBANK/X56153
GENBANK/X56154
GENBANK/X56155
GENBANK/X56156
Base Sequence
Lactobacillaceae/classification/genetics
Listeria/*classification/genetics
Listeria monocytogenes/classification/genetics
Molecular Sequence Data
*Phylogeny
RNA, Bacterial/chemistry/metabolism
RNA, Ribosomal, 16S/*chemistry/metabolism
RNA-Directed DNA Polymerase/*metabolism
|
| Remarks: |
The phylogenetic interrelationships of members of the genus Listeria were investigated by using reverse transcriptase sequencing of 16S rRNA. The sequence data indicate that at the intrageneric level the genus Listeria consists of the following two closely related but distinct lines of descent: (i) the Listeria monocytogenes group of species (including Listeria innocua, Listeria ivanovii, Listeria seeligeri, and Listeria welshimeri) and (ii) the species Listeria grayi and Listeria murrayi. At the intergeneric level a specific phylogenetic relationship between the genera Listeria and Brochothrix was evident. The sequence data clearly demonstrated that the genus Listeria is phylogenetically remote from the genus Lactobacillus and should not be included in an extended family Lactobacillaceae. |
| URL: |
91307972 |
|
| Ref #: |
13013 |
| Author(s): |
Sallen,B.;Rajoharison,A.;Desvarenne,S.;Quinn,F.;Mabilat,C. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Comparative analysis of 16S and 23S rRNA sequences of Listeria species |
| Volume: |
46 |
| Page(s): |
669-74 |
| Year: |
1996 |
| Keyword(s): |
GENBANK/X92948
GENBANK/X92949
GENBANK/X92950
GENBANK/X92951
GENBANK/X92952
GENBANK/X92953
GENBANK/X92954
Base Sequence
Comparative Study
DNA Primers
DNA, Bacterial
DNA, Ribosomal
Listeria/classification/*genetics
Molecular Sequence Data
Phylogeny
*RNA, Bacterial
*RNA, Ribosomal, 16S
*RNA, Ribosomal, 23S
Sequence Homology, Nucleic Acid
|
| Remarks: |
In order to establish the taxonomic value of 16S rRNA and 23S rRNA for distinguishing Listeria species, the complete 23S rRNA sequences for all Listeria species were determined by using the type strains. We designed and experimentally validated a universal 23S rRNA sequencing method, which included PCR amplification of the rDNA gene and direct cycle sequencing of the amplicon with eubacterial primers. The results of our sequence comparison indicated that the genus Listeria can be divided into two subgroups; one subgroup is composed of Listeria monocytogenes, Listeria innocua, Listeria ivanovii, Listeria seeligeri, and Listeria welshimeri, whereas the other subgroup includes Listeria grayi subsp. grayi and Listeria grayi subsp. murrayi. A phylogenetic analysis revealed that these species diverged recently. These results are consistent with 16S rRNA sequence analysis data. For application purposes, one 16S rRNA region that can be sued to distinguish each Listeria species except L. Monocytogenes and L. innocua has been described. In this study we found four 23S rRNA signature regions which, when used in combination, can be used to distinguish the species. |
| URL: |
96376812 |
|
| Ref #: |
13012 |
| Author(s): |
Vaneechoutte,M.;Boerlin,P.;Tichy,H.V.;Bannerman,E.;Jager,B.;Bille,J. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Comparison of PCR-based DNA fingerprinting techniques for the identification of Listeria species and their use for atypical Listeria isolates |
| Volume: |
48 Pt 1 |
| Page(s): |
127-39 |
| Year: |
1998 |
| Keyword(s): |
GENBANK/X98526
GENBANK/X98527
GENBANK/X98528
GENBANK/X98529
GENBANK/X98530
GENBANK/X98531
GENBANK/X98532
Comparative Study
DNA Fingerprinting/*methods
DNA, Bacterial/analysis
Genes, Bacterial/genetics
Listeria monocytogenes/*classification/*genetics/isolation & purification
Molecular Sequence Data
Phylogeny
Polymerase Chain Reaction/methods
Polymorphism, Restriction Fragment Length
Polymorphism, Single-Stranded Conformational
RNA, Bacterial/analysis
RNA, Ribosomal, 16S/analysis
RNA, Transfer/analysis
|
| Remarks: |
Four PCR-based DNA fingerprinting techniques were compared for their ability to identify at the species level a heterogeneous collection of isolates belonging to the six valid Listeria species. 16S rDNA-RFLP analysis identified all species and 16S rDNA-SSCP analysis identified almost all species. Also, isolates with unusual biochemical characteristics and/or unusual antigenic composition could be identified correctly. rRNA-intracistronic length polymorphism analysis suffered from high intraspecific variability, a limited number of fragments per profile, and small length differences between the spacers of different species. tRNA-intergenic length polymorphism analysis resulted in identification of all isolates but one, when fluorescent DNA capillary electrophoresis was used such that fragment length differences of 1 bp could be resolved. The four techniques yielded comparable results relevant to the taxonomy of Listeria. They all indicate a high degree of genetic relatedness between L. innocua and L. welshimeri, homogeneity of L. grayi, distinct but clear relatedness of L. grayi to the other Listeria species, a clear distinction between the two subspecies of L. ivanovii, and a clear distinction between Listeria isolates and isolates from closely related taxa or from species which are phenotypically difficult to distinguish from Listeria. New sequence determination of the 16S rRNA gene was necessary to obtain sequences in accordance with the findings of 16S rDNA-RFLP analysis. |
| URL: |
98203186 |
|
| Ref #: |
13011 |
| Author(s): |
Graham,T.A.;Golsteyn-Thomas,E.J.;Thomas,J.E.;Gannon,V.P. |
| Journal: |
Int J Syst Bacteriol |
| Title: |
Inter- and intraspecies comparison of the 16S-23S rRNA operon intergenic spacer regions of six Listeria spp |
| Volume: |
47 |
| Page(s): |
863-9 |
| Year: |
1997 |
| Keyword(s): |
GENBANK/U44061
GENBANK/U44062
GENBANK/U57912
GENBANK/U57913
GENBANK/U57914
GENBANK/U57915
GENBANK/U57916
GENBANK/U57917
GENBANK/U57918
GENBANK/U78980
GENBANK/U78981
GENBANK/U78982
GENBANK/U78983
GENBANK/U78984
Animal
Comparative Study
DNA, Bacterial/analysis
Human
Listeria/*classification/*genetics
Molecular Sequence Data
Operon/genetics
RNA, Ribosomal, 16S/*analysis
RNA, Ribosomal, 23S/*analysis
Sequence Homology, Nucleic Acid
Species Specificity
Support, Non-U.S. Gov't
|
| Remarks: |
The 16S-23S rRNA intergenic spacer (IGS) regions found in six Listeria species were characterized. PCR amplification of the 16S-23S IGS with a "generic primer" set generated products of about 340 bp (small) and 550 to 590 bp (large) with DNA from all Listeria strains tested. Seven Listeria monocytogenes serotype 4b strains and one L. monocytogenes serotype 4d strain also had an additional PCR product of ca. 360 bp. The 360-bp PCR product from one of these L. monocytogenes serotype 4b strains was identical in nucleotide sequence to the small 340-bp IGS, except that it contained an 18-bp tandem repeat. The small rRNA IGSs of L. innocua, L. ivanovii, L. seeligeri, L. welshimeri, and L. grayi were 83 to 99% homologous to that of L. monocytogenes. The large rRNA IGS of L. monocytogenes was 81 to 96% homologous to those of the other Listeria species and agreed with current taxonomic division among these species. The nucleotide sequences of the central 274 bp of the large rRNA IGS of strains from seven different L. monocytogenes serotypes were highly homologous; however, serotype-specific differences were noted, and four groups were identified within L. monocytogenes based on this analysis. |
| URL: |
97370613 |
|
| Ref #: |
2494 |
| Journal: |
Int. J. Syst. Bacteriol. |
| Title: |
Validation of the publication of new names and new combinations previously effectively published outside the IJSB. List No. 10. |
| Volume: |
33 |
| Page(s): |
438-440 |
| Year: |
1983 |
|
| Ref #: |
2701 |
| Author(s): |
Seeliger,H.P.R. |
| Journal: |
Zentralbl. Bakteriol. Hyg. I Abt. Orig. A |
| Title: |
Apathogene Listerien: Listeria innocua sp. nov. (Seeliger and Schoofs, 1977). |
| Volume: |
249 |
| Page(s): |
487-493 |
| Year: |
1981 |
|
| Ref #: |
3265 |
| Author(s): |
Rocourt,J.;Grimont,F.;Grimont,P.A.D.;Seeliger,H.P.R. |
| Journal: |
Curr. Microbiol. |
| Title: |
DNA relatedness among serovars of Listeria monocytogenes (sensu lato). |
| Volume: |
7 |
| Page(s): |
383-388 |
| Year: |
1983 |
|
| Ref #: |
3266 |
| Author(s): |
Fiedler,F.;Seger,J.;Schrettenbrunner,A.;Seeliger,H.P.R. |
| Journal: |
System. Appl. Microbiol. |
| Title: |
The biochemistry of murein and cell wall teichoid acids in the genus Listeria. |
| Volume: |
5 |
| Page(s): |
360-376 |
| Year: |
1984 |
|
|
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